SNP Profiles of ICS 48 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
1._ICS_48	CT	AG	GG	CT	TT	AA	CC	GT	CT	_	AT	AA	CT	AA
2._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
3._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
4._RUQ_146	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
5._RUQ_146	_	_	CG	_	_	_	_	GT	_	CT	_	AA	_	AA
6._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
7._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
8._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
9._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
10._GC-05-078-2-29	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
14._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
15._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
16._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
17._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
18._ICS_48	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
19._GC-05-120-3-22	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
20._RUQ_146	_	AG	CG	CT	_	_	_	GT	_	_	_	_	CT	AA
21._GC-05-078-2-29	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CC	AA
22._ICS_48	TT	AA	GG	CT	TT	AA	CC	TT	CC	TT	AA	AA	CC	AA
23._RUQ_146	AG	AG	CC	AG	AA	AA	GG	AA	_	_	AA	AA	AG	AA
24._ICS_48_Fld#_105_Plt#_2	AG	AG	CG	AG	AG	AC	AG	AC	_	_	AT	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC
1._ICS_48	CT	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC
2._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC
3._ICS_48	CT	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC
4._RUQ_146	CT	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC
5._RUQ_146	_	_	_	_	_	CG	TT	AG	_	AC	CG	_	_	CC
6._ICS_48	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
7._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
8._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
9._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
10._GC-05-078-2-29	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
11._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
12._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
13._ICS_48	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
14._ICS_48	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
15._ICS_48	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
16._ICS_48	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
17._ICS_48	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
18._ICS_48	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
19._GC-05-120-3-22	CT	AA	GG	TT	CC	CG	TT	_	CT	AC	CG	GT	CT	CC
20._RUQ_146	_	_	_	_	CC	CG	TT	_	CT	AA	GG	GT	CT	CC
21._GC-05-078-2-29	TT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CG	TT	TT	CC
22._ICS_48	TT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CG	TT	TT	CC
23._RUQ_146	AG	AA	GG	AA	GG	CG	AA	_	AG	AC	CG	AC	_	CC
24._ICS_48_Fld#_105_Plt#_2	AG	AT	GG	AG	GG	CC	CC	_	AA	AC	CC	AC	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	GG	AC	CT	GT	AC	AT	GG	X_X	X_X
1._ICS_48	AG	GG	AT	CT	AG	_	AC	CT	GT	AC	AT	GG	X_X	X_X
2._GC-05-120-3-22	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
3._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
4._RUQ_146	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
5._RUQ_146	_	_	_	_	AG	_	_	_	_	AC	_	_	X_X	X_X
6._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
7._GC-05-078-2-29	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
8._GC-05-078-2-29	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
9._GC-05-078-2-29	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
10._GC-05-078-2-29	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
11._GC-05-120-3-22	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
12._GC-05-120-3-22	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
13._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
14._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
15._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
16._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
17._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
18._ICS_48	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
19._GC-05-120-3-22	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
20._RUQ_146	AG	_	AT	CT	AG	CG	AC	CT	GT	AC	_	_	X_X	X_X
21._GC-05-078-2-29	AA	GG	AA	CT	AG	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
22._ICS_48	AA	GG	AA	CT	AG	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
23._RUQ_146	_	GG	AT	AG	AG	CG	AC	AG	AC	AC	AT	GG	X_X	X_X
24._ICS_48_Fld#_105_Plt#_2	_	GG	AT	AG	AA	GG	AC	AG	AC	CC	AT	GG	X_X	X_X

Input profile: ICS_48

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

1._ICS_48

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

2._ICS_48 GC-05-120-3-22

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

3._ICS_48

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5322 3 > FP

Dapeng Zhang, 2016

4._ICS_48 RUQ_146

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._ICS_48 RUQ_146

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._ICS_48

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 4

Dapeng Zhang, 2016

7._ICS_48 GC-05-078-2-29

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._ICS_48 GC-05-078-2-29

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._ICS_48 GC-05-078-2-29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._ICS_48 GC-05-078-2-29

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._ICS_48 GC-05-120-3-22

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._ICS_48 GC-05-120-3-22

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

13._ICS_48

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._ICS_48

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5229 5

Dapeng Zhang, 2016

15._ICS_48

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 1 > FP

Dapeng Zhang, 2016

16._ICS_48

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 1

Dapeng Zhang, 2016

17._ICS_48

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5322 4

Dapeng Zhang, 2016

18._ICS_48

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5322 2 > FP

Dapeng Zhang, 2016

19._ICS_48 GC-05-120-3-22

96.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

20._ICS_48 RUQ_146

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

21._ICS_48 GC-05-078-2-29

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

22._ICS_48

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

23._ICS_48 RUQ_146

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

24._ICS_48 ICS_48_Fld#_105_Plt#_2

40 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 105, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25